CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GJ13518
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0200742
T44047_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0227935
RRM
81
123
LDMTKIKSPTRKEFAFVCFRSQADQQRALETLNGYKWKGKILK
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GH16956
Drosophila grimshawi
FBgn0124427
N
0.953
GI11815
Drosophila mojavensis
FBgn0134574
N
0.909
GL21966
Drosophila persimilis
FBgn0159559
N
0.886
GF10790
Drosophila ananassae
FBgn0087830
N
0.864
GD12311
Drosophila simulans
FBgn0184044
N
0.841
GG13433
Drosophila erecta
FBgn0105705
N
0.841
GE22531
Drosophila yakuba
FBgn0239750
N
0.841
CG3808
Drosophila melanogaster
FBgn0036838
N
0.841
GE22791
Drosophila yakuba
FBgn0239996
N
0.822
GM14902
Drosophila sechellia
FBgn0169823
N
0.818