CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM533900
(
Pediculus humanus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PHUM533900
T45381_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM533900-PA
RRM
1
63
MLAKKCTESDVRNLFSPYGNIEECTVLRDTTGQSCAFVTYASKQSAINAIKAMHHSQTMDGCS
PHUM533900-PA
RRM
516
586
LFIYHLPQEFSDADLATTFHSFGNVISAKVFIDKMTNLSKCFGFVSYDNVLSAQSAIQAMNGFQIGTKRLK
Links
Other
RRM
family RBPs
Other
Pediculus humanus
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GE18585
Drosophila yakuba
FBgn0235992
N
0.772
BGIBMGA010431
Bombyx mori
BGIBMGA010431
I
0.764
GA25731-RA
Drosophila pseudoobscura
FBgn0247108
N
0.757
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.757
AAEL000695
Aedes aegypti
AAEL000695
I
0.743
CpipJ_CPIJ016329
Culex pipiens
CpipJ_CPIJ016329
I
0.736
estExt_fgenesh2_pm.C_730008
Branchiostoma floridae
estExt_fgenesh2_pm.C_730008
I
0.736
CPIJ016329
Culex quinquefasciatus
CPIJ016329
I
0.736