CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GE18585
(
Drosophila yakuba
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0235992
T44323_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0263595
RRM
1
65
MLNKKYTEADVRQLFTGHGTIEECTVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMDGCS
FBpp0263595
RRM
425
495
LFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAMHGFQIGTKRLK
Links
Other
RRM
family RBPs
Other
Drosophila yakuba
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA25731-RA
Drosophila pseudoobscura
FBgn0247108
N
0.985
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.985
CPIJ016329
Culex quinquefasciatus
CPIJ016329
I
0.857
CpipJ_CPIJ016329
Culex pipiens
CpipJ_CPIJ016329
I
0.857
AAEL000695
Aedes aegypti
AAEL000695
I
0.843
BGIBMGA010431
Bombyx mori
BGIBMGA010431
I
0.821
AGAP009477
Anopheles gambiae
AGAP009477
N
0.817
aret
Drosophila melanogaster
FBgn0000114
D
0.774
PHUM533900
Pediculus humanus
PHUM533900
N
0.772
estExt_fgenesh2_pm.C_730008
Branchiostoma floridae
estExt_fgenesh2_pm.C_730008
I
0.757
GL18622
Drosophila persimilis
FBgn0156223
N
0.752