CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9HVS9_POPTR
(
Populus trichocarpa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
POPTR_0010s11420
T45598_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0010s11420.1
RRM
17
82
VKVSNISLTATDRDIEEFFSFSGDILYVEMRRESETTQLAYVTFEESHGADTAMLLSGAIVADLSV
Links
Other
RRM
family RBPs
Other
Populus trichocarpa
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GSVIVG00011624001
Vitis vinifera
GSVIVG00011624001
N
0.761
PDK_20s1373891g001
Phoenix dactylifera
PDK_20s1373891g001
N
0.710
MDP0000320634
Malus x domestica
MDP0000320634
N
0.710
ppa021083m
Prunus persica
ppa021083m
N
0.706
Cucsa.174100
Cucumis sativus
Cucsa.174100
N
0.701