CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
PPA20102
(
Pristionchus pacificus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PPA20102
T45812_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PPA20102
RRM
21
91
LYVGDLHEDTTESVLFDRFSSAGPVLSIRVCRDAITRRSLGYGYINFQQPADAERALDTLNYDVINGKPCR
PPA20102
RRM
109
178
IYIKNLDKVVDSRSLFDTFSLFGGILSCKVATDDQGVSKGFGFVNFETQEAADQAVEKVNGMLLAGKKVF
PPA20102
RRM
202
271
VYIKNLEEDVDKEKLEKMFSEFGKVTSCAVMSDANGKPKGFGFVAFEEPEQAEKAVNEMHEKQLDGSEKK
PPA20102
RRM
307
376
LYVKNLDETVEEPKLREVFEKYGTITSCKVMCDENGRSKGFGFVCFEKPEEATKAVTEMNGNMTFTKPLY
Links
Other
RRM
family RBPs
Other
Pristionchus pacificus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOAG_01058
Loa loa
LOAG_01058
I
0.733
Bm1_16080
Brugia malayi
Bm1_16080
I
0.733
Bm1_06880
Brugia malayi
Bm1_06880
I
0.730