LOAG_01058 (Loa loa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOAG_01058 T29566_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.711
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.711
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.711
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.708
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOAG_01058T0 RRM 20 90
LOAG_01058T0 RRM 108 177
LOAG_01058T0 RRM 201 270
LOAG_01058T0 RRM 306 375

Links

Other RRM family RBPs
Other Loa loa RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Bm1_16080 Brugia malayi Bm1_16080 I 1.000
Bm1_06880 Brugia malayi Bm1_06880 I 0.993
pab-1 Caenorhabditis elegans Y106G6H.2 I 0.765
CJA17800 Caenorhabditis japonica CJA17800 N 0.758
Minc05218 Meloidogyne incognita Minc05218 N 0.758
CBN04295 Caenorhabditis brenneri CBN04295 I 0.747
AGAP011092 Anopheles gambiae AGAP011092 I 0.745
ISCW014211 Ixodes scapularis ISCW014211 I 0.737
AAEL010318 Aedes aegypti AAEL010318 I 0.734
PPA20102 Pristionchus pacificus PPA20102 N 0.733
CBG02207 Caenorhabditis briggsae CBG02207 N 0.733
CBG07431 Caenorhabditis briggsae CBG07431 N 0.733
CRE22405 Caenorhabditis remanei CRE22405 N 0.726
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.723
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.723
pab-2 Caenorhabditis elegans F18H3.3 N 0.719
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.716
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.716
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.716
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.715
GE11925 Drosophila yakuba FBgn0229707 I 0.713
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.713
CBN18184 Caenorhabditis brenneri CBN18184 N 0.712
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.711
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.711
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.711
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.711
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.711
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.711
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.711
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.711
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.711
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.711
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.711
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.711
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.711
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.711
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.711
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.711
PABPC1 Homo sapiens ENSG00000070756 D 0.711
PABPC4 Homo sapiens ENSG00000090621 D 0.711
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.711
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.711
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.711
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.711
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.711
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.711
LOC100054235 Equus caballus ENSECAG00000009396 I 0.711
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.711
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.711
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.711
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.711
Gm10110 Mus musculus ENSMUSG00000062093 I 0.711
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.711
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.711
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.711
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.711
GK19652 Drosophila willistoni FBgn0221650 I 0.709
GH21052 Drosophila grimshawi FBgn0128514 I 0.709
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.709
PHUM617090 Pediculus humanus PHUM617090 I 0.709
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.708
PABPC4 Gallus gallus ENSGALG00000003800 I 0.708
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.708
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.708
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.708
GG21846 Drosophila erecta FBgn0114024 I 0.706
GM21847 Drosophila sechellia FBgn0176724 I 0.706
GD11341 Drosophila simulans FBgn0183090 I 0.706
GJ21671 Drosophila virilis FBgn0208790 I 0.706
pAbp Drosophila melanogaster FBgn0261619 D 0.706
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.705
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.704
185682 Helobdella robusta 185682 I 0.702
GI18654 Drosophila mojavensis FBgn0141393 I 0.702
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.702
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.701
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.701