sqd-1 (Caenorhabditis elegans)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Y73B6BL.6 T46322_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Y73B6BL.6a.1 RRM 31 100
Y73B6BL.6a.1 RRM 112 181
Y73B6BL.6a.2 RRM 31 100
Y73B6BL.6a.2 RRM 112 181
Y73B6BL.6a.3 RRM 31 100
Y73B6BL.6a.3 RRM 112 181
Y73B6BL.6a.4 RRM 31 100
Y73B6BL.6a.4 RRM 112 181
Y73B6BL.6a.5 RRM 31 100
Y73B6BL.6a.5 RRM 112 181
Y73B6BL.6a.6 RRM 31 100
Y73B6BL.6a.6 RRM 112 181
Y73B6BL.6a.7 RRM 31 100
Y73B6BL.6a.7 RRM 112 181
Y73B6BL.6b.1 RRM 31 100
Y73B6BL.6b.1 RRM 112 181
Y73B6BL.6b.2 RRM 31 100
Y73B6BL.6b.2 RRM 112 181
Y73B6BL.6b.3 RRM 31 100
Y73B6BL.6b.3 RRM 112 181

Links

Other RRM family RBPs
Other Caenorhabditis elegans RBPs

8 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CRE15246 Caenorhabditis remanei CRE15246 N 0.979
CRE16899 Caenorhabditis remanei CRE16899 N 0.971
CBG05471 Caenorhabditis briggsae CBG05471 N 0.950
Ppa-sqd-1 Pristionchus pacificus PPA06391 N 0.793
WUBG_09430 Wuchereria bancrofti WUBG_09430 N 0.771
Bm1_31255 Brugia malayi Bm1_31255 N 0.771
LOAG_00763 Loa loa LOAG_00763 N 0.771