CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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sqd-1
(
Caenorhabditis elegans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Y73B6BL.6
T46322_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Y73B6BL.6a.1
RRM
31
100
IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVE
Y73B6BL.6a.1
RRM
112
181
VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD
Y73B6BL.6a.2
RRM
31
100
IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVE
Y73B6BL.6a.2
RRM
112
181
VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD
Y73B6BL.6a.3
RRM
31
100
IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVE
Y73B6BL.6a.3
RRM
112
181
VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD
Y73B6BL.6a.4
RRM
31
100
IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVE
Y73B6BL.6a.4
RRM
112
181
VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD
Y73B6BL.6a.5
RRM
31
100
IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVE
Y73B6BL.6a.5
RRM
112
181
VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD
Y73B6BL.6a.6
RRM
31
100
IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVE
Y73B6BL.6a.6
RRM
112
181
VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD
Y73B6BL.6a.7
RRM
31
100
IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVE
Y73B6BL.6a.7
RRM
112
181
VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD
Y73B6BL.6b.1
RRM
31
100
IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVE
Y73B6BL.6b.1
RRM
112
181
VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD
Y73B6BL.6b.2
RRM
31
100
IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVE
Y73B6BL.6b.2
RRM
112
181
VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD
Y73B6BL.6b.3
RRM
31
100
IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVE
Y73B6BL.6b.3
RRM
112
181
VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD
Links
Other
RRM
family RBPs
Other
Caenorhabditis elegans
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CRE15246
Caenorhabditis remanei
CRE15246
N
0.979
CRE16899
Caenorhabditis remanei
CRE16899
N
0.971
CBG05471
Caenorhabditis briggsae
CBG05471
N
0.950
Ppa-sqd-1
Pristionchus pacificus
PPA06391
N
0.793
WUBG_09430
Wuchereria bancrofti
WUBG_09430
N
0.771
Bm1_31255
Brugia malayi
Bm1_31255
N
0.771
LOAG_00763
Loa loa
LOAG_00763
N
0.771