CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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29905.m000431
(
Ricinus communis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
29905.m000431
T48706_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
29905.m000431
RRM
304
372
VYVRNLPYNMTTAQLEVEFEKFGPIKQEGVQVRYNKQQGYCFGFVEFLSLSSMNSAIQASPMIIGGRQA
Links
Other
RRM
family RBPs
Other
Ricinus communis
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava29087.valid.m1
Manihot esculenta
cassava29087.valid.m1
N
0.857
cassava30484.valid.m1
Manihot esculenta
cassava30484.valid.m1
N
0.829
Glyma08g27040.1
Glycine max
Glyma08g27040.1
N
0.783
GSVIVG00032909001
Vitis vinifera
GSVIVG00032909001
N
0.768
ppa005348m
Prunus persica
ppa005348m
N
0.768
Glyma18g50250.1
Glycine max
Glyma18g50250.1
N
0.768
PK12047.1
Cannabis sativa
PK12047.1
N
0.768
MDP0000269053
Malus x domestica
MDP0000269053
N
0.754
MDP0000270535
Malus x domestica
MDP0000270535
N
0.754