CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Aqu1.228675
(
Amphimedon queenslandica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Aqu1.228675
T49054_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aqu1.228675
RRM
64
137
LYVGNINPKMTEEMLCQHFGKFGPLASVKIMWPRTEEEKSRNKNCGFVAYMKRPDAEKALDATKGSSIMGYEVQ
Links
Other
RRM
family RBPs
Other
Amphimedon queenslandica
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Aqu1.228676
Amphimedon queenslandica
Aqu1.228676
N
1.000
Aqu1.202889
Amphimedon queenslandica
Aqu1.202889
N
1.000
estExt_fgenesh2_pm.C_3790010
Branchiostoma floridae
estExt_fgenesh2_pm.C_3790010
N
0.757