CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pm.C_3790010
(
Branchiostoma floridae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh2_pm.C_3790010
T50941_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pm.C_3790010
RRM
216
289
LYIGNINPKMTEEMLCQEFGKFGPLASVKIMWPRTEEERARNRNCGFVAYMNRKDAERALNALRDKEIMSFKIQ
Links
Other
RRM
family RBPs
Other
Branchiostoma floridae
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
2610101N10Rik
Mus musculus
ENSMUSG00000032407
N
0.773
U2SURP
Ornithorhynchus anatinus
ENSOANG00000003644
N
0.773
U2SURP
Oryctolagus cuniculus
ENSOCUG00000012121
N
0.773
XM_001372164.1
Monodelphis domestica
ENSMODG00000021242
N
0.773
U2SURP
Macaca mulatta
ENSMMUG00000002775
N
0.773
U2SURP
Loxodonta africana
ENSLAFG00000002566
N
0.773
U2SURP
Macropus eugenii
ENSMEUG00000000127
N
0.773
U2SURP
Meleagris gallopavo
ENSMGAG00000006549
N
0.773
U2SURP
Procavia capensis
ENSPCAG00000015251
N
0.773
ENSPPYG00000014178
Pongo pygmaeus
ENSPPYG00000014178
N
0.773
U2SURP
Taeniopygia guttata
ENSTGUG00000008687
N
0.773
U2SURP
Tursiops truncatus
ENSTTRG00000017170
N
0.773
U2SURP
Vicugna pacos
ENSVPAG00000004697
N
0.773
U2SURP
Tupaia belangeri
ENSTBEG00000016313
N
0.773
U2SURP
Sus scrofa
ENSSSCG00000011684
N
0.773
U2SURP
Pan troglodytes
ENSPTRG00000015489
N
0.773
U2SURP
Pteropus vampyrus
ENSPVAG00000016077
N
0.773
RGD1307882
Rattus norvegicus
ENSRNOG00000008607
N
0.773
U2SURP
Gorilla gorilla
ENSGGOG00000005563
N
0.773
U2SURP
Myotis lucifugus
ENSMLUG00000002920
N
0.773
U2SURP
Choloepus hoffmanni
ENSCHOG00000001300
N
0.773
LOC424773
Gallus gallus
ENSGALG00000002612
N
0.773
U2SURP
Cavia porcellus
ENSCPOG00000011656
N
0.773
U2SURP
Canis familiaris
ENSCAFG00000007973
N
0.773
Q148C6_BOVIN
Bos taurus
ENSBTAG00000009154
N
0.773
Ame_R004744
Ailuropoda melanoleuca
Ame_R004744
N
0.773
U2SURP
Anolis carolinensis
ENSACAG00000009512
N
0.773
U2SURP
Dasypus novemcinctus
ENSDNOG00000006427
N
0.773
LOC100411013
Callithrix jacchus
ENSCJAG00000001639
N
0.773
U2SURP
Erinaceus europaeus
ENSEEUG00000013553
N
0.773
U2SURP
Echinops telfairi
ENSETEG00000000149
N
0.773
LOC100051188
Equus caballus
ENSECAG00000022460
N
0.773
U2SURP
Homo sapiens
ENSG00000163714
N
0.773
zgc:163098
Danio rerio
ENSDARG00000078911
N
0.757
Aqu1.228675
Amphimedon queenslandica
Aqu1.228675
N
0.757
Aqu1.202889
Amphimedon queenslandica
Aqu1.202889
N
0.757
Aqu1.228676
Amphimedon queenslandica
Aqu1.228676
N
0.757
U2SURP
Gasterosteus aculeatus
ENSGACG00000003763
N
0.747
sr140
Xenopus tropicalis
ENSXETG00000022133
N
0.747
U2SURP
Takifugu rubripes
ENSTRUG00000017810
N
0.747
U2SURP
Tetraodon nigroviridis
ENSTNIG00000012767
N
0.747
U2SURP
Oryzias latipes
ENSORLG00000010235
N
0.747
ENSMODG00000010847
Monodelphis domestica
ENSMODG00000010847
N
0.743
U2SURP
Danio rerio
ENSDARG00000061490
N
0.733
estExt_Genewise1.C_650028
Daphnia pulex
estExt_Genewise1.C_650028
N
0.716
U2SURP
Spermophilus tridecemlineatus
ENSSTOG00000015997
N
0.707
Smp_161730
Schistosoma mansoni
Smp_161730
N
0.703
Sjc_0023880
Schistosoma japonicum
Sjc_0023880
N
0.703