cassava12938.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava12938.valid.m1 T49119_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava12938.valid.m1 RRM 540 608
cassava12938.valid.m1 RRM 644 717

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

6 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava12937.valid.m1 Manihot esculenta cassava12937.valid.m1 N 1.000
cassava35933.valid.m1 Manihot esculenta cassava35933.valid.m1 N 0.923
29675.m000389 Ricinus communis 29675.m000389 N 0.825
B9H5S7_POPTR Populus trichocarpa POPTR_0005s09600 N 0.741
A9PEY6_POPTR Populus trichocarpa POPTR_0007s07800 N 0.741
Glyma11g10790.1 Glycine max Glyma11g10790.1 N 0.720