cassava39930.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava39930.m1 T49375_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava39930.m1 RRM 25 82

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava8085.valid.m1 Manihot esculenta cassava8085.valid.m1 N 0.730
MDP0000266453 Malus x domestica MDP0000266453 N 0.730
GSVIVG00035985001 Vitis vinifera GSVIVG00035985001 N 0.730
B9HB72_POPTR Populus trichocarpa POPTR_0006s28150 N 0.730
cassava18379.valid.m1 Manihot esculenta cassava18379.valid.m1 N 0.730
29848.m004524 Ricinus communis 29848.m004524 N 0.730
LjB10M19.170.nd Lotus japonicus LjB10M19.170.nd N 0.730
ppa000894m Prunus persica ppa000894m N 0.730
Medtr8g083970 Medicago truncatula Medtr8g083970 N 0.730
Glyma16g15820.1 Glycine max Glyma16g15820.1 N 0.730
Glyma08g34030.1 Glycine max Glyma08g34030.1 N 0.730
Cucsa.162880 Cucumis sativus Cucsa.162880 N 0.716
POPTR_0018s02740 Populus trichocarpa POPTR_0018s02740 N 0.716
SB04G005430 Sorghum bicolor Sb04g005430 N 0.716
GRMZM2G133308 Zea mays GRMZM2G133308 N 0.716
GRMZM2G174785 Zea mays GRMZM2G174785 N 0.716
BRADI3G31900 Brachypodium distachyon BRADI3G31900 N 0.716
PK13350.1 Cannabis sativa PK13350.1 N 0.716
BGIOSIBCE005866 Oryza indica BGIOSIBCE005866 N 0.703
LOC_Os02g08360 Oryza sativa LOC_Os02g08360 N 0.703