Cucsa.162880 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.162880 T49572_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.162880.1 RRM 188 261
Cucsa.162880.2 RRM 188 261
Cucsa.162880.3 RRM 188 261

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
POPTR_0018s02740 Populus trichocarpa POPTR_0018s02740 N 0.986
cassava18379.valid.m1 Manihot esculenta cassava18379.valid.m1 N 0.973
29848.m004524 Ricinus communis 29848.m004524 N 0.973
GSVIVG00035985001 Vitis vinifera GSVIVG00035985001 N 0.973
Medtr8g083970 Medicago truncatula Medtr8g083970 N 0.973
PK13350.1 Cannabis sativa PK13350.1 N 0.973
Glyma08g34030.1 Glycine max Glyma08g34030.1 N 0.959
SB04G005430 Sorghum bicolor Sb04g005430 N 0.959
B9HB72_POPTR Populus trichocarpa POPTR_0006s28150 N 0.959
cassava8085.valid.m1 Manihot esculenta cassava8085.valid.m1 N 0.959
ppa000894m Prunus persica ppa000894m N 0.959
Glyma16g15820.1 Glycine max Glyma16g15820.1 N 0.959
LjB10M19.170.nd Lotus japonicus LjB10M19.170.nd N 0.959
MDP0000266453 Malus x domestica MDP0000266453 N 0.959
GRMZM2G174785 Zea mays GRMZM2G174785 N 0.946
BRADI3G31900 Brachypodium distachyon BRADI3G31900 N 0.946
GRMZM2G133308 Zea mays GRMZM2G133308 N 0.946
LOC_Os02g08360 Oryza sativa LOC_Os02g08360 N 0.932
e_gw1.7.796.1 Selaginella moellendorfii e_gw1.7.796.1 N 0.932
BGIOSIBCE005866 Oryza indica BGIOSIBCE005866 N 0.932
mgf001511m Mimulus guttatus mgf001511m N 0.919
AT5G25060 Arabidopsis thaliana AT5G25060-TAIR-G N 0.892
BRADI3G05977 Brachypodium distachyon BRADI3G05977 N 0.892
XM_002874191.1 Arabidopsis lyrata scaffold_602605.1 N 0.892
estExt_fgenesh2_pg.C_1370031 Physcomitrella patens estExt_fgenesh2_pg.C_1370031 N 0.878
estExt_gwp_gw1.C_1960080 Physcomitrella patens estExt_gwp_gw1.C_1960080 N 0.878
AT5G10800 Arabidopsis thaliana AT5G10800-TAIR-G N 0.824
XM_002873431.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000838 N 0.743
cassava39930.m1 Manihot esculenta cassava39930.m1 N 0.716