CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
e_gw.60.130.1
(
Branchiostoma floridae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw.60.130.1
T50229_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.60.130.1
RRM
61
130
VFVGKIPRDLFEDELVPVFESIGKIYELRLMMDFNGNNRGYAFVMYTSRDDAKRAVKQLNNYEIRKGRLL
e_gw.60.130.1
RRM
141
191
LFVGGIPKNKKKHEILEEMSKVTEGVVDVIVYPSATDKTKNRGFAFVEYES
Links
Other
RRM
family RBPs
Other
Branchiostoma floridae
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCING00000004101
Ciona intestinalis
ENSCING00000004101
I
0.735
A1CF
Homo sapiens
ENSG00000148584
D
0.727
A1CF
Myotis lucifugus
ENSMLUG00000016071
N
0.714
RBM47
Homo sapiens
ENSG00000163694
I
0.714