CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gwW.26.138.1
(
Chlamydomonas reinhardtii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gwW.26.138.1
T50324_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gwW.26.138.1
RRM
38
108
IFAGGLDYDLTEGDLLAVFAQFGEVVDLNLIRDKDSGKSKGFAFVAYEDQRSTVLATDNFNGAKVAGRTIR
Links
Other
RRM
family RBPs
Other
Chlamydomonas reinhardtii
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.98.15.1
Volvox carteri
e_gw1.98.15.1
N
0.831
gw1.39.43.1
Selaginella moellendorfii
gw1.39.43.1
N
0.761
estExt_fgenesh1_pg.C_410012
Monosiga brevicollis
estExt_fgenesh1_pg.C_410012
N
0.746
Aqu1.200557
Amphimedon queenslandica
Aqu1.200557
N
0.732
Aqu1.228439
Amphimedon queenslandica
Aqu1.228439
N
0.718
gw1.1.945.1
Micromonas pusilla
gw1.1.945.1
N
0.718
SPPG_01752
Spizellomyces punctatus
SPPG_01752
N
0.716
XP_002164481.1
Hydra magnipapillata
XP_002164481.1
N
0.704
estExt_fgenesh1_pg.C_30395
Batrachochytrium dendrobatidis
estExt_fgenesh1_pg.C_30395
N
0.704
AGAP000977
Anopheles gambiae
AGAP000977
N
0.704
PHUM617480
Pediculus humanus
PHUM617480
N
0.704
RBMX2
Oryzias latipes
ENSORLG00000013183
N
0.704