CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.39.43.1
(
Selaginella moellendorfii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.39.43.1
T53255_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.39.43.1
RRM
38
108
IFFGGLAYELNEGDILAVFAQYGEVVDVNLIRDKGTGKSKGYGFLAYEDQRSTTLAVDNLNGAQVAGRTLR
Links
Other
RRM
family RBPs
Other
Selaginella moellendorfii
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gwW.26.138.1
Chlamydomonas reinhardtii
e_gwW.26.138.1
N
0.761
e_gw1.98.15.1
Volvox carteri
e_gw1.98.15.1
N
0.761
estExt_fgenesh3_pg.C_500008
Postia placenta
estExt_fgenesh3_pg.C_500008
N
0.732
gwh2.2.841.1
Phanerochaete chrysosporium
gwh2.2.841.1
N
0.732
gw1.1.2244.1
Trichoplax adhaerens
gw1.1.2244.1
N
0.732
nasonia_NCBI_hmm382923
Nasonia vitripennis
nasonia_NCBI_hmm382923
N
0.718
XP_002164481.1
Hydra magnipapillata
XP_002164481.1
N
0.718
estExt_Genewise1Plus.C_110324
Daphnia pulex
estExt_Genewise1Plus.C_110324
N
0.718
estExt_fgenesh2_kg.C_42587
Serpula lacrymans
estExt_fgenesh2_kg.C_42587
N
0.718
gw1.4.2036.1
Heterobasidion annosum
gw1.4.2036.1
N
0.718
GK14925
Drosophila willistoni
FBgn0216930
N
0.704
XP_791635.2
Strongylocentrotus purpuratus
XP_791635.2
N
0.704
PMAA_079770
Penicillium marneffei
PMAA_079770
N
0.704
XP_001180915.1
Strongylocentrotus purpuratus
XP_001180915.1
N
0.704
gw1.462.53.1
Capitella teleta
gw1.462.53.1
N
0.704
AGAP000977
Anopheles gambiae
AGAP000977
N
0.704
BC1G_09608
Botrytis cinerea
BC1G_09608
N
0.704
gw1.6.253.1
Chlorella NC64A
gw1.6.253.1
N
0.703