CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh1_pg.C_chr_40476
(
Mycosphaerella graminicola
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh1_pg.C_chr_40476
T50664_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_chr_40476
RRM
125
202
VYVTGLSPNSQEDQLLQTLRGDQYFGQYGKIIKIVVSKAKDPSHPHSVGVYVTYERKEDAASCIAAVDGSKNGDRTLR
Links
Other
RRM
family RBPs
Other
Mycosphaerella graminicola
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pg.C_11480
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_11480
N
0.936
PTRG_01476
Pyrenophora tritici repentis
PTRG_01476
N
0.747
AB04906.1
Alternaria brassicicola
AB04906.1
N
0.734
e_gw1.11.630.1
Cochliobolus heterostrophus C5
e_gw1.11.630.1
N
0.722
SNOG_06382
Stagonospora nodorum
SNOG_06382
N
0.722
EAT86213.2
Phaeosphaeria nodorum
EAT86213.2
N
0.722