CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.11.630.1
(
Cochliobolus heterostrophus C5
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.11.630.1
T49710_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.11.630.1
RRM
115
193
VYVTGLTPTIREDELLKTLRGEDYFGQYGKILKIVVSKAKENAQHQQSVGVYVTFARKEDAERCINAVDGSQNGDRVLR
Links
Other
RRM
family RBPs
Other
Cochliobolus heterostrophus C5
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTRG_01476
Pyrenophora tritici repentis
PTRG_01476
N
0.962
AB04906.1
Alternaria brassicicola
AB04906.1
N
0.949
EAT86213.2
Phaeosphaeria nodorum
EAT86213.2
N
0.873
SNOG_06382
Stagonospora nodorum
SNOG_06382
N
0.873
BC1G_04334
Botrytis cinerea
BC1G_04334
N
0.772
e_gw1.5.156.1
Thielavia terrestris
e_gw1.5.156.1
N
0.734
estExt_fgenesh1_pg.C_11480
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_11480
N
0.734
CHGG_09245
Chaetomium globosum
CHGG_09245
N
0.734
VDBG_07902
Verticillium albo atrum
VDBG_07902
N
0.722
VDAG_05474
Verticillium dahliae
VDAG_05474
N
0.722
estExt_fgenesh1_pg.C_chr_40476
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_40476
N
0.722
estExt_Genewise1.C_52146
Myceliophthora thermophila
estExt_Genewise1.C_52146
N
0.709
ATEG_06631
Aspergillus terreus
CADATEAG00009109
N
0.700
An11g06210
Aspergillus niger
CADANGAG00008954
N
0.700
BDBG_02075
Blastomyces dermatitidis
BDBG_02075
N
0.700
Pc12g08810
Penicillium chrysogenum
Pc12g08810
N
0.700
HCAG_05763
Histoplasma capsulatum
HCAG_05763
N
0.700
PABG_01879
Paracoccidioides brasiliensis
PABG_01879
N
0.700