CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
estExt_fgenesh1_pg.C_sca_3_chr4_2_00789
(
Nectria haematococca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh1_pg.C_sca_3_chr4_2_00789
T50678_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_sca_3_chr4_2_00789
RRM
104
166
LIVARLSYDADERDLEKEFGRFGPIERIRIIVDTHAHEKPNKKKKPHRGYAFVVFEREKDMRE
Links
Other
RRM
family RBPs
Other
Nectria haematococca
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FGSG_12967
Fusarium graminearum
FGSG_12967
N
0.889
BC1G_08884
Botrytis cinerea
BC1G_08884
N
0.825
SS1G_11435
Sclerotinia sclerotiorum
SS1G_11435
N
0.810