CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1Plus.C_sca_2_chr3_3_01358
(
Nectria haematococca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1Plus.C_sca_2_chr3_3_01358
T51537_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_sca_2_chr3_3_01358
RRM
22
91
VLIRRLPLNTSKDSVRLMAVFSQQLVDIELLPHDQSKDPGFISAVLQFRSAGGAYEAQKMLHGRTVAEDA
estExt_Genewise1Plus.C_sca_2_chr3_3_01358
RRM
294
358
LYVGNLPADTSEEELKALFIKQRGYKRLCFRTKANGPMCFVEFEEVSFATKALHDLYGHPLHNST
Links
Other
RRM
family RBPs
Other
Nectria haematococca
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GLRG_02493
Colletotrichum graminicola
GLRG_02493
N
0.741
CHGG_06237
Chaetomium globosum
CHGG_06237
N
0.719
estExt_Genewise1.C_14390
Thielavia terrestris
estExt_Genewise1.C_14390
N
0.704