CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CHGG_06237
(
Chaetomium globosum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CHGG_06237
T28612_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CHGT_06237
RRM
182
251
ALIRNLPLNTSEESLRLMMVFSKDLVDVEVLPAEQSADAGFRSAVLKFKSPAGAQEAKNMLDGRSNISND
CHGT_06237
RRM
467
531
LYVGNLPLDTSEEELKALFSRQRGYKRLCFRTKQNGPMCFVEFEDVTFATKALHDLYGQLLHNSV
Links
Other
RRM
family RBPs
Other
Chaetomium globosum
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.2.4074.1
Myceliophthora thermophila
e_gw1.2.4074.1
N
0.956
estExt_Genewise1.C_14390
Thielavia terrestris
estExt_Genewise1.C_14390
N
0.852
GLRG_02493
Colletotrichum graminicola
GLRG_02493
N
0.830
MGG_03053
Magnaporthe oryzae
MGG_03053
N
0.800
Pa_1_14970
Podospora anserina
Pa_1_14970
N
0.748
estExt_Genewise1Plus.C_sca_2_chr3_3_01358
Nectria haematococca
estExt_Genewise1Plus.C_sca_2_chr3_3_01358
N
0.719