fgenesh1_pg.scaffold_245000036 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.scaffold_245000036 T52014_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_245000036 RRM 121 190
fgenesh1_pg.scaffold_245000036 RRM 217 287
fgenesh1_pg.scaffold_245000036 RRM 384 440

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
rbm39a Danio rerio ENSDARG00000011613 N 0.717
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.715
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.709
AAH75146 Xenopus laevis AAH75146 N 0.705
AAH77813 Xenopus laevis AAH77813 N 0.705
RBM39 Gallus gallus ENSGALG00000001550 N 0.704
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.704
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.704
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.702
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.702
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 0.700
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 0.700
RBM39 Sorex araneus ENSSARG00000007673 N 0.700
RBM39 Sus scrofa ENSSSCG00000007309 N 0.700
RBM39 Tarsius syrichta ENSTSYG00000005605 N 0.700
RBM39 Tursiops truncatus ENSTTRG00000017039 N 0.700
RBM39 Pan troglodytes ENSPTRG00000013449 N 0.700
RBM39 Microcebus murinus ENSMICG00000001668 N 0.700
RBM39 Equus caballus ENSECAG00000013423 N 0.700
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.700
RBM39 Canis familiaris ENSCAFG00000008327 N 0.700
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 0.700
RBM39 Homo sapiens ENSG00000131051 N 0.700
RBM39 Loxodonta africana ENSLAFG00000010346 N 0.700
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 0.700
Rbm39 Mus musculus ENSMUSG00000027620 N 0.700
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 0.700
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 0.700