CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh2_pg.scaffold_9000128
(
Branchiostoma floridae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh2_pg.scaffold_9000128
T52282_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_9000128
RRM
21
84
VFVGNLNTVKVSKAEVENVFSRYGRIRGFSIHKGYAFVQYTDEAEARAAVTGEDGREIAGQVLD
Links
Other
RRM
family RBPs
Other
Branchiostoma floridae
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw.517.22.1
Branchiostoma floridae
e_gw.517.22.1
N
0.984
fgenesh2_pg.scaffold_127000006
Branchiostoma floridae
fgenesh2_pg.scaffold_127000006
N
0.750
fgenesh2_pg.scaffold_6000171
Branchiostoma floridae
fgenesh2_pg.scaffold_6000171
I
0.703
ENSTNIG00000000334
Tetraodon nigroviridis
ENSTNIG00000000334
I
0.703
ISCW016264
Ixodes scapularis
ISCW016264
N
0.703