CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma07g27300.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma07g27300.1
T52701_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma07g27300.1
RRM
34
100
VKVSNISLVTSKKDIEEFFSFSGDIRYIEMQRESGHTQVAYVTFKDTQGADTAVLLTGSKIGDLYVT
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma02g09510.1
Glycine max
Glyma02g09510.1
N
0.985
Cucsa.174100
Cucumis sativus
Cucsa.174100
N
0.725
LOC_Os03g50560
Oryza sativa
LOC_Os03g50560
N
0.701
BGIOSIBCE012743
Oryza indica
BGIOSIBCE012743
N
0.701