LOC_Os03g50560 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os03g50560 T45002_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os03g50560.1 RRM 6 72

Links

Other RRM family RBPs
Other Oryza sativa RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE012743 Oryza indica BGIOSIBCE012743 N 1.000
BRADI1G10760 Brachypodium distachyon BRADI1G10760 N 0.940
SB01G010170 Sorghum bicolor Sb01g010170 N 0.940
GRMZM2G127559 Zea mays GRMZM2G127559 N 0.940
GRMZM2G114789 Zea mays GRMZM2G114789 N 0.841
Cucsa.322000 Cucumis sativus Cucsa.322000 N 0.806
PDK_20s1373891g001 Phoenix dactylifera PDK_20s1373891g001 N 0.806
A9PE83_POPTR Populus trichocarpa POPTR_0001s02090 N 0.783
GSVIVG00024381001 Vitis vinifera GSVIVG00024381001 N 0.768
PK05006.1 Cannabis sativa PK05006.1 N 0.754
Glyma09g33960.1 Glycine max Glyma09g33960.1 N 0.746
ppa021083m Prunus persica ppa021083m N 0.731
Glyma01g01950.1 Glycine max Glyma01g01950.1 N 0.731
MDP0000596287 Malus x domestica MDP0000596287 N 0.725
PDK_20s1613681g001 Phoenix dactylifera PDK_20s1613681g001 N 0.725
Medtr5g029540 Medicago truncatula Medtr5g029540 N 0.725
B9GZI4_POPTR Populus trichocarpa POPTR_0003s09410 N 0.725
GSVIVG00013098001 Vitis vinifera GSVIVG00013098001 N 0.725
PK28591.1 Cannabis sativa PK28591.1 N 0.716
GSVIVG00011624001 Vitis vinifera GSVIVG00011624001 N 0.710
BGIOSIBCE020376 Oryza indica BGIOSIBCE020376 N 0.710
Medtr8g077770 Medicago truncatula Medtr8g077770 N 0.710
GRMZM2G102808 Zea mays GRMZM2G102808 N 0.710
mgf007506m Mimulus guttatus mgf007506m N 0.710
BRADI1G51740 Brachypodium distachyon BRADI1G51740 N 0.710
SB10G000940 Sorghum bicolor Sb10g000940 N 0.710
LOC_Os06g02240 Oryza sativa LOC_Os06g02240 N 0.710
PDK_20s1346002g005 Phoenix dactylifera PDK_20s1346002g005 N 0.710
MDP0000320634 Malus x domestica MDP0000320634 N 0.701
Glyma07g27300.1 Glycine max Glyma07g27300.1 N 0.701
GRMZM2G035719 Zea mays GRMZM2G035719 N 0.701
AT4G17720 Arabidopsis thaliana AT4G17720-TAIR-G N 0.700
XM_002867996.1 Arabidopsis lyrata fgenesh2_kg.7__2538__AT4G17720.1 N 0.700