CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma10g07280.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma10g07280.1
T52762_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma10g07280.1
RRM
14
84
LYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAMKLKNNSYLNGKVIR
Glyma10g07280.1
RRM
102
171
VFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIY
Glyma10g07280.1
RRM
193
262
LYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEAMNGLKFGSKNLY
Glyma10g07280.1
RRM
296
365
LYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLY
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma13g21190.1
Glycine max
Glyma13g21190.1
N
0.911
Glyma03g34580.1
Glycine max
Glyma03g34580.1
N
0.769
Glyma19g37270.1
Glycine max
Glyma19g37270.1
N
0.758
Medtr7g124520
Medicago truncatula
Medtr7g124520
N
0.744
cassava15018.m1
Manihot esculenta
cassava15018.m1
N
0.708