CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.45.178.1
(
Lottia gigantea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.45.178.1
T53275_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.45.178.1
RRM
3
73
IFVGHIPHGFYETEMRSFFSQFGKVTRVRLSRSKKTGNSKGYAYVEFEDVDVAEIAAETMNNYLMFERLLK
Links
Other
RRM
family RBPs
Other
Lottia gigantea
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MK67I_BOVIN
Bos taurus
ENSBTAG00000019387
N
0.746
LOC100055172
Equus caballus
ENSECAG00000018478
N
0.732
MKI67IP
Tursiops truncatus
ENSTTRG00000005849
N
0.732
MKI67IP
Vicugna pacos
ENSVPAG00000005847
N
0.732
MKI67IP
Choloepus hoffmanni
ENSCHOG00000002227
N
0.718
mki67ip
Xenopus tropicalis
ENSXETG00000000839
N
0.718
gw1.11.214.1
Batrachochytrium dendrobatidis
gw1.11.214.1
N
0.704
estExt_fgenesh1_pg.C_110198
Daphnia pulex
estExt_fgenesh1_pg.C_110198
N
0.704
estExt_gwp.C_4020036
Branchiostoma floridae
estExt_gwp.C_4020036
N
0.704
estExt_fgenesh2_pg.C_7810009
Branchiostoma floridae
estExt_fgenesh2_pg.C_7810009
N
0.704
MKI67IP
Loxodonta africana
ENSLAFG00000030731
N
0.704
MKI67IP
Erinaceus europaeus
ENSEEUG00000008535
N
0.704
MKI67IP
Felis catus
ENSFCAG00000010787
N
0.704
Ame_R009999
Ailuropoda melanoleuca
Ame_R009999
N
0.704