CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mgf023368m
(
Mimulus guttatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
mgf023368m
T53791_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf023368m
RRM
8
76
LFIGGISWETNEERLKEHFHGYGDVLQAVVMRDKITGKPRGFGFVVFADPSILDRVLEDSHVIDGRTFM
mgf023368m
RRM
102
162
LIEDGFRQYFESYGTVTDVVIMYDQQTNRPRGFGFISVDSEEAVDMVLHKTFHELSGKQVE
Links
Other
RRM
family RBPs
Other
Mimulus guttatus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.723
Glyma20g34330.1
Glycine max
Glyma20g34330.1
N
0.709
Glyma10g33320.1
Glycine max
Glyma10g33320.1
N
0.709