CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma10g33320.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma10g33320.1
T52769_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma10g33320.1
RRM
8
76
LFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPNILDRVLEDKHVIDGRTVD
Glyma10g33320.1
RRM
114
183
IFVGGLPPTLTEEKFRQYFESYGNVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKSFHDLNGKQVE
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma20g34330.1
Glycine max
Glyma20g34330.1
N
0.978
ppa005309m
Prunus persica
ppa005309m
N
0.835
PK00513.1
Cannabis sativa
PK00513.1
N
0.835
30008.m000830
Ricinus communis
30008.m000830
N
0.827
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.827
MDP0000173934
Malus x domestica
MDP0000173934
N
0.820
MDP0000217366
Malus x domestica
MDP0000217366
N
0.813
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.806
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.806
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.799
B9HKT4_POPTR
Populus trichocarpa
POPTR_0008s17030
N
0.770
B9HSS5_POPTR
Populus trichocarpa
POPTR_0010s07790
N
0.770
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.755
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.755
ppa005979m
Prunus persica
ppa005979m
N
0.755
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.755
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.755
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.755
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.755
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.741
LOC_Os10g33230
Oryza sativa
LOC_Os10g33230
N
0.741
MDP0000320861
Malus x domestica
MDP0000320861
N
0.741
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.741
XM_002870277.1
Arabidopsis lyrata
fgenesh2_kg.7__2913__AT4G14300.1
N
0.738
AT4G14300
Arabidopsis thaliana
AT4G14300-TAIR-G
N
0.738
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.727
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.719
B9IBE6_POPTR
Populus trichocarpa
POPTR_0014s18470
N
0.719
MDP0000130865
Malus x domestica
MDP0000130865
N
0.719
MDP0000286430
Malus x domestica
MDP0000286430
N
0.712
mgf023368m
Mimulus guttatus
mgf023368m
N
0.709
BRADI3G28430
Brachypodium distachyon
BRADI3G28430
N
0.705