CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCBI_GNO_14500057
(
Daphnia pulex
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
NCBI_GNO_14500057
T53816_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCBI_GNO_14500057
RRM
93
153
SDEVVKDSLYREFKKYGEVSIKLVHGAEPEDRLAYVSFRNPEDAREARHSKQRIILYDKPA
NCBI_GNO_14500057
RRM
294
363
LFAGNLEINITEEELRRIFGNYGIVEDVDIKRPPPGTGNAYAFVRFENLDQANRCKVELSGQYIGKFQVK
NCBI_GNO_14500057
RRM
375
437
IWVGGLGSWTSLAQLEREFDRFGAIKKIEYNKGDTSAYILYETIEAAQAAVQDMRGFCLGGPD
Links
Other
RRM
family RBPs
Other
Daphnia pulex
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm812
Apis mellifera
amel4_ncbi_hmm812
N
0.746
BGIBMGA004109
Bombyx mori
BGIBMGA004109
N
0.714
nasonia_NCBI_hmm1324624
Nasonia vitripennis
nasonia_NCBI_hmm1324624
N
0.707