CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G069678
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G069678
T54073_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G069678_P01
RRM
106
174
IWVGDLQYWMDENYLHSCFGSSGEVVNIKVIRNRHSGVSEGYGFIEFYTHVSAEKALQNFSGHVMPNTD
GRMZM2G069678_P01
RRM
199
270
IFVGDLAVDVTDAMLLELFSNKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKIHAMTEMNGVYCSTRPIR
GRMZM2G069678_P01
RRM
300
364
VYVGGLDPNVSEDELRKAFAKYGDLASVKIPFGKQCGFVQFVNRVDAEEALHGLNGSTIGKQAVR
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB04G023540
Sorghum bicolor
Sb04g023540
N
0.961
BRADI3G46470
Brachypodium distachyon
BRADI3G46470
N
0.913
SB06G018280
Sorghum bicolor
Sb06g018280
N
0.898
LOC_Os04g37690
Oryza sativa
LOC_Os04g37690
N
0.898
BRADI5G11810
Brachypodium distachyon
BRADI5G11810
N
0.864
LOC_Os02g35950
Oryza sativa
LOC_Os02g35950
N
0.854
BGIOSIBCE007488
Oryza indica
BGIOSIBCE007488
N
0.854
LOC_Os09g28810
Oryza sativa
LOC_Os09g28810
I
0.768
BRADI4G32380
Brachypodium distachyon
BRADI4G32380
N
0.763
Sb02g026820
Sorghum bicolor
Sb02g026820
I
0.758
GRMZM2G467907
Zea mays
GRMZM2G467907
I
0.749
GRMZM2G168163
Zea mays
GRMZM2G168163
I
0.749