CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G536584
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G536584
T54257_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G536584_P01
RRM
221
262
GLVIDKETGKPKGYGFCEYKDEETVLSACRDLQGYEINGCQL
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava22174.valid.m1
Manihot esculenta
cassava22174.valid.m1
N
0.818
GRMZM2G437315
Zea mays
GRMZM2G437315
N
0.814
GRMZM2G453025
Zea mays
GRMZM2G453025
N
0.750
PDK_20s1489112g001
Phoenix dactylifera
PDK_20s1489112g001
N
0.750
B9GT48_POPTR
Populus trichocarpa
POPTR_0002s06200
N
0.740