CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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EFA75115.1
(
Polysphondylium pallidum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
EFA75115.1
T54334_0.6
NCBI (2013-Jan-11)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFA75115.1
RRM
17
84
LFVKNLPFKITSAEIYELFGAYGGIRQVRLGNASDTMGTAFVVYDDIFDARNACEHLSGYNFGGRYLV
Links
Other
RRM
family RBPs
Other
Polysphondylium pallidum
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DDB_G0286297
Dictyostelium discoideum
DDB_G0286297
N
0.750
fgeneshMC_pg.3_#_621
Mucor circinelloides
fgeneshMC_pg.3_#_621
N
0.725
estExt_fgenesh1_pg.C_1580052
Nematostella vectensis
estExt_fgenesh1_pg.C_1580052
N
0.706