fgeneshMC_pg.3_#_621 (Mucor circinelloides)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgeneshMC_pg.3_#_621 T52426_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshMC_pg.3_#_621 RRM 23 90

Links

Other RRM family RBPs
Other Mucor circinelloides RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.956
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.941
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.779
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.779
PHUM617060 Pediculus humanus PHUM617060 N 0.768
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.765
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.754
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.754
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.754
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.754
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.754
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.754
s_454910 Phytophthora sojae s_454910 N 0.750
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.750
PITG_10282 Phytophthora infestans PITG_10282 N 0.750
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.750
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.750
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.739
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.739
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.739
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.739
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.739
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.739
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.739
SF3B14 Gallus gallus ENSGALG00000016501 N 0.739
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.739
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.739
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.739
LOC100056247 Equus caballus ENSECAG00000015618 N 0.739
AC008073.5 Homo sapiens ENSG00000115128 N 0.739
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.739
ISCW024082 Ixodes scapularis ISCW024082 N 0.739
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.739
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.739
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.739
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.739
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.739
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.739
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.739
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.739
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.739
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.739
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.739
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.739
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.739
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.739
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.739
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.739
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.739
AAEL005909 Aedes aegypti AAEL005909 N 0.739
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.739
sf3b14 Danio rerio ENSDARG00000009753 N 0.739
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.739
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.739
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.739
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.739
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.739
GH16287 Drosophila grimshawi FBgn0123758 N 0.735
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.735
GG14070 Drosophila erecta FBgn0106332 N 0.735
GF10910 Drosophila ananassae FBgn0087950 N 0.735
GI13232 Drosophila mojavensis FBgn0135989 N 0.735
GE20495 Drosophila yakuba FBgn0068445 N 0.735
GM13852 Drosophila sechellia FBgn0168783 N 0.735
mgf016428m Mimulus guttatus mgf016428m N 0.735
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.735
estExt_fgenesh1_pg.C_120176 Monosiga brevicollis estExt_fgenesh1_pg.C_120176 N 0.735
CG13298 Drosophila melanogaster FBgn0035692 N 0.735
GK17258 Drosophila willistoni FBgn0219257 N 0.735
GD13137 Drosophila simulans FBgn0184859 N 0.735
GJ12004 Drosophila virilis FBgn0199256 N 0.735
GL22529 Drosophila persimilis FBgn0160121 N 0.735
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.735
LOAG_04189 Loa loa LOAG_04189 N 0.735
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.725
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.725
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.725
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.725
CRE22109 Caenorhabditis remanei CRE22109 N 0.725
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.725
EFA75115.1 Polysphondylium pallidum EFA75115.1 N 0.725
CBN08400 Caenorhabditis brenneri CBN08400 N 0.725
Minc01156 Meloidogyne incognita Minc01156 N 0.725
CJA01433 Caenorhabditis japonica CJA01433 N 0.725
AGAP002780 Anopheles gambiae AGAP002780 N 0.725
AAH57709 Xenopus laevis AAH57709 N 0.725
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.725
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.725
CBG06987 Caenorhabditis briggsae CBG06987 N 0.725
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.725
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.725
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.721
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.721
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.721
160.m00066 Tetrahymena thermophila 160.m00066 N 0.721
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.710
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.710
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.710
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.710
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.710
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.710
PPA24922 Pristionchus pacificus PPA24922 N 0.710
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.710
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.710
68671 Helobdella robusta 68671 N 0.710
SB01G003790 Sorghum bicolor Sb01g003790 N 0.710
32497 Aureococcus anophagefferens 32497 N 0.707
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.706
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.706
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.706