CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AC233576_3
(
Medicago truncatula
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AC233576_3
T54418_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AC233576_3.1
RRM
27
97
LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENLNYVPLNGKPIR
AC233576_3.1
RRM
115
184
LFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVY
AC233576_3.1
RRM
202
271
VYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGKVL
AC233576_3.1
RRM
306
375
LYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVY
Links
Other
RRM
family RBPs
Other
Medicago truncatula
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma20g31120.1
Glycine max
Glyma20g31120.1
N
0.719
28644.m000904
Ricinus communis
28644.m000904
N
0.701