Ame_R017106 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R017106 T55634_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.723
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.723
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R017106 RRM 13 83
Ame_R017106 RRM 101 169
Ame_R017106 RRM 193 262
Ame_R017106 RRM 295 363

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.710
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.710
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.710
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.710
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.710
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.707
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.707
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.707
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.707
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.707
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.707
PABPC1 Homo sapiens ENSG00000070756 D 0.707
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.707
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.707
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.707
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.707
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.707
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.707
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.703
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.703