PABPC1 (Taeniopygia guttata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTGUG00000012067 T41965_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.996
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.996
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.996
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.932
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.882
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000012437 RRM 13 83
ENSTGUP00000012437 RRM 101 169
ENSTGUP00000012437 RRM 193 262
ENSTGUP00000012437 RRM 296 364

Links

Other RRM family RBPs
Other Taeniopygia guttata RBPs

180 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 1.000
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 1.000
Pabpc1 Mus musculus ENSMUSG00000022283 I 1.000
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 1.000
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.996
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.996
PABPC1 Homo sapiens ENSG00000070756 D 0.996
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.996
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.996
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.996
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.996
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.996
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.996
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.996
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.996
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.996
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.993
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.993
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.975
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.968
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.968
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.964
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.953
AAI08463 Xenopus laevis AAI08463 I 0.950
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.950
pabpc1a Danio rerio ENSDARG00000017219 I 0.950
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.950
Q6IP09 Xenopus laevis Q6IP09 I 0.950
AAH72110 Xenopus laevis AAH72110 I 0.950
CAA40721 Xenopus laevis CAA40721 I 0.946
P20965 Xenopus laevis P20965 I 0.946
AAH52100 Xenopus laevis AAH52100 I 0.946
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.946
AAA60936 Xenopus laevis AAA60936 I 0.943
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.943
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.943
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.935
PABPC3 Homo sapiens ENSG00000151846 D 0.932
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.932
pabpc1b Danio rerio ENSDARG00000021140 I 0.929
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.928
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.928
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.925
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.925
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.916
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.914
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.910
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.910
AAH73435 Xenopus laevis AAH73435 I 0.903
PABPC4 Gallus gallus ENSGALG00000003800 I 0.896
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.892
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.892
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.889
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.886
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.885
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.885
LOC100054235 Equus caballus ENSECAG00000009396 I 0.885
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.885
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.885
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.885
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.885
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.882
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.882
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.882
pabpc4 Danio rerio ENSDARG00000059259 I 0.882
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.882
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.882
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.882
PABPC4 Homo sapiens ENSG00000090621 D 0.882
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.878
Gm10110 Mus musculus ENSMUSG00000062093 I 0.878
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.878
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.875
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.875
LOC100056021 Equus caballus ENSECAG00000020699 I 0.875
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.871
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.871
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.871
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.867
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.864
PABPC1L Gallus gallus ENSGALG00000004123 I 0.864
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.860
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.860
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.857
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.857
Q6GR16 Xenopus laevis Q6GR16 I 0.849
AAH71118 Xenopus laevis AAH71118 I 0.849
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.849
AAK29408 Xenopus laevis AAK29408 I 0.846
AAH80020 Xenopus laevis AAH80020 I 0.846
Q98SP8 Xenopus laevis Q98SP8 I 0.846
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.839
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.839
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.835
pabpc1l Danio rerio ENSDARG00000002597 I 0.832
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.832
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.824
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.817
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.816
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.813
PABPC1L Bos taurus ENSBTAG00000016849 I 0.810
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.806
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.806
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.806
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.806
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.803
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.799
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.799
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.799
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.796
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.796
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.796
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.796
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.792
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.792
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.792
PABPC1L Homo sapiens ENSG00000101104 I 0.792
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.789
LOC100070836 Equus caballus ENSECAG00000022681 I 0.789
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.785
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.785
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.785
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.784
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.781
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.778
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.774
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.770
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.770
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.770
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.770
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.767
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.767
PHUM617090 Pediculus humanus PHUM617090 I 0.763
ISCW014211 Ixodes scapularis ISCW014211 I 0.757
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.756
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.756
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.756
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.753
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.753
AGAP011092 Anopheles gambiae AGAP011092 I 0.753
AAEL010318 Aedes aegypti AAEL010318 I 0.753
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.749
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.749
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.749
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.749
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.749
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.749
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.742
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.742
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.742
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.739
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.739
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.739
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.736
185682 Helobdella robusta 185682 I 0.735
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.729
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.728
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.728
ENSTBEG00000009320 Tupaia belangeri ENSTBEG00000009320 I 0.725
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.725
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.725
GI18654 Drosophila mojavensis FBgn0141393 I 0.722
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.717
GJ21671 Drosophila virilis FBgn0208790 I 0.715
GH21052 Drosophila grimshawi FBgn0128514 I 0.715
GK19652 Drosophila willistoni FBgn0221650 I 0.715
69344 Helobdella robusta 69344 I 0.714
Bm1_06880 Brugia malayi Bm1_06880 I 0.711
Bm1_16080 Brugia malayi Bm1_16080 I 0.711
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.711
LOAG_01058 Loa loa LOAG_01058 I 0.711
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.710
Ame_R017106 Ailuropoda melanoleuca Ame_R017106 I 0.710
GL11548 Drosophila persimilis FBgn0149157 I 0.708
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.708
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.707
GF12652 Drosophila ananassae FBgn0089688 I 0.704
GE11925 Drosophila yakuba FBgn0229707 I 0.704
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.703
GG21846 Drosophila erecta FBgn0114024 I 0.701