CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pg.C_30499
(
Agaricus bisporus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh2_pg.C_30499
T56309_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_30499
RRM
163
230
YVGRIKETGAGPETEEVVIRHFKEWGDIERIRVLQYRSVAFVTYVNELSAQFAKEAMACQSLDNDEIL
Links
Other
RRM
family RBPs
Other
Agaricus bisporus
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh3_kg.C_110041
Heterobasidion annosum
estExt_fgenesh3_kg.C_110041
N
0.897
CC1G_07830
Coprinopsis cinerea
CC1G_07830
N
0.884
gww2.4.309.1
Phanerochaete chrysosporium
gww2.4.309.1
N
0.870
e_gw1.8.1556.1
Pleurotus ostreatus
e_gw1.8.1556.1
N
0.870
e_gww1.21.50.1
Laccaria bicolor
e_gww1.21.50.1
N
0.870
e_gw1.132.34.1
Postia placenta
e_gw1.132.34.1
N
0.841
fgenesh3_pm.1866__1
Postia placenta
fgenesh3_pm.1866__1
N
0.841
EEB90925.1
Moniliophthora perniciosa
EEB90925.1
N
0.766
estExt_fgenesh2_kg.C_70051
Serpula lacrymans
estExt_fgenesh2_kg.C_70051
N
0.750
SJAG_04898
Schizosaccharomyces japonicus
SJAG_04898
N
0.710