CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_80828
(
Agaricus bisporus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1.C_80828
T56443_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_80828
RRM
27
93
LYVSNLPAYVTDEALASALTGFGPFRPKIIRDGAASLVSGSIEFKFLEKAEKALAVLQARSVPNTNP
estExt_Genewise1.C_80828
RRM
120
185
LIKQLPPGFTDSQLYDIFRPFGALASVRAHTQFGADTGVVEFWSEDDARQAEEAMHCAEVEGHNIA
estExt_Genewise1.C_80828
RRM
271
340
LFCKNLDSEIDSNGLFTHFRQFGQIVSARVMRDETGSSRGFGFVSFQTPDQAAAAMHAMNGAQLGSKAIV
Links
Other
RRM
family RBPs
Other
Agaricus bisporus
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh3_pg.C_scaffold_12000111
Laccaria bicolor
fgenesh3_pg.C_scaffold_12000111
N
0.724