CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1Plus.C_20592
(
Pleurotus ostreatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1Plus.C_20592
T56470_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_20592
RRM
18
85
LYITNVPTYVSDESIVMAFASCGPFRPNIPRDIPGSVLSGTVEFRFLEKAEKALATLQARPIPGLTQH
estExt_Genewise1Plus.C_20592
RRM
111
176
LVKHLPPGYTDSQLYDLFRPYGALASTRAQTQFGPDTGMVEFWREEDAKRAEEELHCAELDGQNIA
estExt_Genewise1Plus.C_20592
RRM
211
280
LFCKNLDPTLDSNSLFSLFREFGQIVSARVMRNENGESRGFGFVSYHTPDQAAAAMHAMNGKQIGSKQMV
Links
Other
RRM
family RBPs
Other
Pleurotus ostreatus
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh3_pg.C_scaffold_12000111
Laccaria bicolor
fgenesh3_pg.C_scaffold_12000111
N
0.735
estExt_Genewise1Plus.C_120567
Heterobasidion annosum
estExt_Genewise1Plus.C_120567
N
0.706