CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSPATP00005059001
(
Paramecium tetraurelia
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSPATP00005059001
T56747_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSPATP00005059001
RRM
18
76
NKTLGHDKYYKVFSQFGTIQRMLIFERSLTWKTFVEFEFPESANKARQIMNDKLFCDDP
GSPATP00005059001
RRM
396
454
KKVVTSQMLYNLFSIYGNIDKMIYLKERSSALIQYMTYDYAAIAKESLNDIMFYGQSIK
GSPATP00005059001
RRM
510
577
IQVSNLTKNSCQLNILQQYLQEYGIIKQSKIITNAMKYMAILKFASTEIALTVLVKNNGLELDGKPIQ
Links
Other
RRM
family RBPs
Other
Paramecium tetraurelia
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GSPATP00017515001
Paramecium tetraurelia
GSPATP00017515001
N
0.855
GSPATP00038282001
Paramecium tetraurelia
GSPATP00038282001
N
0.844
GSPATP00018910001
Paramecium tetraurelia
GSPATP00018910001
N
0.749
GSPATP00024551001
Paramecium tetraurelia
GSPATP00024551001
N
0.741
GSPATP00030448001
Paramecium tetraurelia
GSPATP00030448001
N
0.703