CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSPATP00038282001
(
Paramecium tetraurelia
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSPATP00038282001
T56905_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSPATP00038282001
RRM
19
76
KTLGHDKYFKVFSQFGTIQRMLIFERSLTWKTFIEFDNPESAIKARQSMNDKLFCDDA
GSPATP00038282001
RRM
411
469
KKVVTSQMLYNLFSIYGNIDKMIYLKERSSALIQYVTQDHAAIAKESLNDIMFYGQSIK
GSPATP00038282001
RRM
525
592
IQVSNLTKNSCQIPVLQQYLQDYGNIRLSKLVTNATKYMAILKYPSTEVAITVLANNNGLDLDGKQIQ
Links
Other
RRM
family RBPs
Other
Paramecium tetraurelia
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GSPATP00017515001
Paramecium tetraurelia
GSPATP00017515001
N
0.941
GSPATP00005059001
Paramecium tetraurelia
GSPATP00005059001
N
0.844
GSPATP00018910001
Paramecium tetraurelia
GSPATP00018910001
N
0.775
GSPATP00024551001
Paramecium tetraurelia
GSPATP00024551001
N
0.751
GSPATP00030448001
Paramecium tetraurelia
GSPATP00030448001
N
0.703