CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.1.325.1
(
Phytophthora capsici
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.1.325.1
T56993_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.1.325.1
RRM
250
319
LFVCKLNPVTESSDLDMAFCRFGTCKSEVIRDQKTGDSLCFAFVEFTDRRHCEEAYFKMNNVLLDDRRIK
Links
Other
RRM
family RBPs
Other
Phytophthora capsici
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PITG_08368
Phytophthora infestans
PITG_08368
N
0.971
gwEuk.85.2.1
Phytophthora ramorum
gwEuk.85.2.1
N
0.957
s_517330
Phytophthora sojae
s_517330
N
0.943
estExt_fgenesh2_pm.C_1170007
Branchiostoma floridae
estExt_fgenesh2_pm.C_1170007
N
0.718
PHUM268300
Pediculus humanus
PHUM268300
N
0.704