CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000283466
(
Malus x domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MDP0000283466
T57567_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000283466
RRM
24
96
LYVGDLHPYMTEGQLEEAFKGFKGVTSVRLCRDTATATNRSLRYGYVNFTTPEEAIRAMEVMNHSMLHGRVIR
MDP0000283466
RRM
114
183
VFVKNLSESINSVELEEMFKKFGRTLSCKLAMFEDGKSKGYGFVQFESEESAIAAIEKLNGTTVGNKQLY
MDP0000283466
RRM
205
274
LYMKNLDPTLKEELVEEKFSEFGKTVSFAIAKDDHGNSRGFGFVNFENPDDARRAMEGMNGSQLGSKVLY
MDP0000283466
RRM
308
377
VYVKNIDDDVSDEELVGHFSQCGMITSAKIMRDDKGISKGFGFVCFSTPEEGNKAVNTFHGYMFRRKPLY
Links
Other
RRM
family RBPs
Other
Malus x domestica
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000319175
Malus x domestica
MDP0000319175
N
0.933
ppa020841m
Prunus persica
ppa020841m
N
0.792
30078.m002213
Ricinus communis
30078.m002213
N
0.714
cassava15018.m1
Manihot esculenta
cassava15018.m1
N
0.710
Medtr7g124520
Medicago truncatula
Medtr7g124520
N
0.703
Cucsa.378900
Cucumis sativus
Cucsa.378900
N
0.703