CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Minc16232
(
Meloidogyne incognita
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Minc16232
T57870_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc16232
RRM
41
84
LFVGQIPRNLEEKDLRHIFESFGKIFEFTILKDKYTGMHKVVAL
Minc16232
RRM
120
188
LFVGMLSKQYNEDQVRAMFAPYGRIEEVTVLRGADNVSKGCAFVKFSQASEAERAILALHGCQTMGASS
Minc16232
RRM
472
542
LFIYHLPQEFTDNELIQMFAPFGQLLSAKVFVDRATNQSKCFGFVSYDNPNSATTAIQSMNGFQVGMKRLK
Links
Other
RRM
family RBPs
Other
Meloidogyne incognita
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Minc04066
Meloidogyne incognita
Minc04066
N
0.935
CELF5
Macropus eugenii
ENSMEUG00000013080
I
0.701