CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pc21g03370
(
Penicillium chrysogenum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Pc21g03370
T57998_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pc21g03370.t1
RRM
104
178
IFVSRLSYDTKETDLEREFGRFGPIERISIVKDTVSDKKKKPHRGYGFVVFEREKDMKAAYKETENLSIRGRPVV
Links
Other
RRM
family RBPs
Other
Penicillium chrysogenum
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AFLA_094660
Aspergillus flavus
CADAFLAG00009151
N
0.740
AO090120000497
Aspergillus oryzae
CADAORAG00011610
N
0.740
NFIA_073580
Neosartorya fischeri
CADNFIAG00007026
N
0.727
An14g04950
Aspergillus niger
CADANGAG00011432
N
0.727
ATEG_06160
Aspergillus terreus
CADATEAG00000843
N
0.714
fgenesh1_pg.00710_#_132
Aspergillus carbonarius
fgenesh1_pg.00710_#_132
N
0.701
TEQG_03381
Trichophyton equinum
TEQG_03381
N
0.701
MGYG_07680
Microsporum gypseum
MGYG_07680
N
0.701
TERG_08496
Trichophyton rubrum
TERG_08496
N
0.701