CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Smp_079730
(
Schistosoma mansoni
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Smp_079730
T58647_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Smp_079730
RRM
18
88
IFVGNIPYEATEEKLIELFSKAGPVIGFRLVYDRESGKPKGYGFCEYNNPAIAASALRNLQNIEFNGRPLR
Links
Other
RRM
family RBPs
Other
Schistosoma mansoni
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Sjc_0072240
Schistosoma japonicum
Sjc_0072240
N
1.000
SPRG_10503
Saprolegnia parasitica
SPRG_10503
N
0.718
112541
Helobdella robusta
112541
N
0.718
estExt_Genewise1.C_550102
Capitella teleta
estExt_Genewise1.C_550102
N
0.718
e_gw.65.105.1
Branchiostoma floridae
e_gw.65.105.1
N
0.704
e_gw.65.110.1
Branchiostoma floridae
e_gw.65.110.1
N
0.704