e_gw.65.110.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.65.110.1 T50240_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.65.110.1 RRM 20 90

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

138 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 1.000
ISCW015573 Ixodes scapularis ISCW015573 N 0.930
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.930
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.915
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.915
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.915
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.915
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.915
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.915
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.915
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.915
AAB50269 Xenopus laevis AAB50269 N 0.915
AAH41291 Xenopus laevis AAH41291 N 0.915
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.915
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.915
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.915
Cstf2 Mus musculus ENSMUSG00000031256 N 0.915
CSTF2 Homo sapiens ENSG00000101811 N 0.915
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.915
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.915
CSTF2 Felis catus ENSFCAG00000007000 N 0.915
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.915
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.915
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.915
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.915
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.915
AAH80037 Xenopus laevis AAH80037 N 0.915
DGIL_AUG5s2502g11t1 Acyrtosiphon pisum DGIL_AUG5s2502g11t1 N 0.915
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.915
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.915
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.915
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.901
CSTF2T Homo sapiens ENSG00000177613 N 0.901
CSTF2T Felis catus ENSFCAG00000013011 N 0.901
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.901
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.901
cstf2 Danio rerio ENSDARG00000044009 N 0.901
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.901
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.901
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.901
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.901
DGIL_AUG5s12011g4t1 Acyrtosiphon pisum DGIL_AUG5s12011g4t1 N 0.901
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.901
Cstf2t Mus musculus ENSMUSG00000053536 N 0.901
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.901
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.901
CSTF2T Sorex araneus ENSSARG00000002013 N 0.901
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.901
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.901
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.901
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.901
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.901
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.901
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.901
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.901
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.901
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.901
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.901
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.901
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.901
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.887
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.887
CSTF2 Echinops telfairi ENSETEG00000004931 N 0.887
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.887
ENSOANG00000004208 Ornithorhynchus anatinus ENSOANG00000004208 N 0.887
Ame_R018329 Ailuropoda melanoleuca Ame_R018329 N 0.887
CSTF2 Vicugna pacos ENSVPAG00000006466 N 0.873
CSTF2 Tupaia belangeri ENSTBEG00000010029 N 0.873
CSTF2 Equus caballus ENSECAG00000009325 N 0.873
CPIJ012662 Culex quinquefasciatus CPIJ012662 N 0.873
CSTF2 Choloepus hoffmanni ENSCHOG00000012803 N 0.873
CpipJ_CPIJ012662 Culex pipiens CpipJ_CPIJ012662 N 0.873
CSTF2T Oryctolagus cuniculus ENSOCUG00000004647 N 0.859
AAEL013869 Aedes aegypti AAEL013869 N 0.859
AGAP010918 Anopheles gambiae AGAP010918 N 0.845
XP_001181887.1 Strongylocentrotus purpuratus XP_001181887.1 N 0.845
fgeneshTA2_pg.C_scaffold_5000618 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_5000618 N 0.845
ENSCING00000017649 Ciona intestinalis ENSCING00000017649 N 0.845
XP_001186020.1 Strongylocentrotus purpuratus XP_001186020.1 N 0.845
XP_002159315.1 Hydra magnipapillata XP_002159315.1 N 0.845
28644.m000926 Ricinus communis 28644.m000926 N 0.845
Glyma10g36350.1 Glycine max Glyma10g36350.1 N 0.831
SNAPOd2T00016915001 Oikopleura dioica SNAPOd2T00016915001 N 0.831
mgf012202m Mimulus guttatus mgf012202m N 0.831
mgf002767m Mimulus guttatus mgf002767m N 0.831
Glyma20g31220.1 Glycine max Glyma20g31220.1 N 0.831
CstF-64 Drosophila melanogaster FBgn0027841 N 0.831
GH18352 Drosophila grimshawi FBgn0125820 N 0.831
GJ10336 Drosophila virilis FBgn0197622 N 0.831
GD19237 Drosophila simulans FBgn0190742 N 0.831
GK14167 Drosophila willistoni FBgn0216173 N 0.831
GE25546 Drosophila yakuba FBgn0242611 N 0.831
GSVIVG00013670001 Vitis vinifera GSVIVG00013670001 N 0.831
GM17877 Drosophila sechellia FBgn0172784 N 0.831
GL24357 Drosophila persimilis FBgn0161947 N 0.831
GF16912 Drosophila ananassae FBgn0093932 N 0.831
GG22991 Drosophila erecta FBgn0115148 N 0.831
Cucsa.364140 Cucumis sativus Cucsa.364140 N 0.831
GI23336 Drosophila mojavensis FBgn0146063 N 0.831
GA20525-RA Drosophila pseudoobscura FBgn0080519 N 0.831
MDP0000142436 Malus x domestica MDP0000142436 N 0.831
PK22244.1 Cannabis sativa PK22244.1 N 0.831
MDP0000283046 Malus x domestica MDP0000283046 N 0.831
LjSGA_018671.1 Lotus japonicus LjSGA_018671.1 N 0.831
ppa004010m Prunus persica ppa004010m N 0.831
ENSCSAVG00000010770 Ciona savignyi ENSCSAVG00000010770 N 0.831
LOC_Os11g07490 Oryza sativa LOC_Os11g07490 N 0.817
PASA_GEN_0100181 Daphnia pulex PASA_GEN_0100181 N 0.817
SB05G004860 Sorghum bicolor Sb05g004860 N 0.817
BRADI4G24180 Brachypodium distachyon BRADI4G24180 N 0.817
CSTF64 Arabidopsis thaliana AT1G71800-TAIR-G N 0.817
GRMZM2G174919 Zea mays GRMZM2G174919 N 0.817
XM_002887343.1 Arabidopsis lyrata Al_scaffold_0002_1857 N 0.817
AGAP004414 Anopheles gambiae AGAP004414 N 0.803
estExt_Genewise1.C_550102 Capitella teleta estExt_Genewise1.C_550102 N 0.803
MDP0000208337 Malus x domestica MDP0000208337 N 0.803
PHUM441150 Pediculus humanus PHUM441150 N 0.789
gw1.20.80.1 Selaginella moellendorfii gw1.20.80.1 N 0.789
BGIOSIBCE033690 Oryza indica BGIOSIBCE033690 N 0.789
112541 Helobdella robusta 112541 N 0.789
s_451557 Phytophthora sojae s_451557 N 0.775
estExt_fgenesh1_pm.C_80118 Phytophthora capsici estExt_fgenesh1_pm.C_80118 N 0.775
fgenesh1_pg.C_scaffold_74000038 Phytophthora ramorum fgenesh1_pg.C_scaffold_74000038 N 0.775
PITG_14249 Phytophthora infestans PITG_14249 N 0.775
SPRG_10503 Saprolegnia parasitica SPRG_10503 N 0.775
gw1.36.17.1 Physcomitrella patens gw1.36.17.1 N 0.761
SPPG_01899 Spizellomyces punctatus SPPG_01899 N 0.746
LOAG_12614 Loa loa LOAG_12614 N 0.732
EFA81339.1 Polysphondylium pallidum EFA81339.1 N 0.732
Bm1_06205 Brugia malayi Bm1_06205 N 0.732
WUBG_08006 Wuchereria bancrofti WUBG_08006 N 0.732
GSTUMT00004863001 Tuber melanosporum GSTUMT00004863001 N 0.718
estExt_Genewise1.C_230050 Postia placenta estExt_Genewise1.C_230050 N 0.718
RO3G_14170 Rhizopus oryzae RO3G_14170 N 0.718
estExt_fgeneshPB_pg.C_20804 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_20804 N 0.718
Sjc_0072240 Schistosoma japonicum Sjc_0072240 N 0.704
UM02881 Ustilago maydis UM02881 N 0.704
Smp_079730 Schistosoma mansoni Smp_079730 N 0.704