CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_002157902.1
(
Hydra magnipapillata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
XP_002157902.1
T59044_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SNRNP70
M068_0.6
Homo sapiens
RWUCAAG
RNAcompete
Ray et al.(2013)
RNCMPT00070
0.732
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002157902.1
RRM
103
173
LFVARINYDTTESKLRRELETHGPIRKIHMVYNFVKRKPRGYAFVEFEHERDMQAAFKHSDGKKIDGRRIV
Links
Other
RRM
family RBPs
Other
Hydra magnipapillata
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNRNP70
Macropus eugenii
ENSMEUG00000015650
I
0.708
113249
Helobdella robusta
113249
I
0.704
P09406
Xenopus laevis
P09406
I
0.703
CAA30972
Xenopus laevis
CAA30972
I
0.703
AAH97714
Xenopus laevis
AAH97714
I
0.703
AAI08448
Xenopus laevis
AAI08448
I
0.703
AAH81025
Xenopus laevis
AAH81025
I
0.703