CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDCD11
(
Ochotona princeps
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ENSOPRG00000010593
T60476_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000009706
S1
82
136
LCEGMRILGCVKEVNELELVISLPNGLQGYVQVTEICNAYTEKLTEQMAQEEPLK
ENSOPRP00000009706
S1
185
260
ALKPGMLLTGTVSSLEDHGYLMDIGVSGTRAFLPLQKAQEYIRQKNKGANLKVGHYLHCIIEEVKGDGGVVSLSVG
ENSOPRP00000009706
S1
280
348
LLPGLVVKAQVQKVTRFGLMLNFLTFFTGTVDFMHLDPKKVGTYFSNQAVRACILWVHPQSRGVRLSLR
ENSOPRP00000009706
S1
447
520
DIKPGAVIKGTVLTIKPYGILLKVGEQIRGLVPANHLADVFMKNPEKKYHVGEELKCRVLLCDPEAKKLIMTLK
ENSOPRP00000009706
S1
538
609
KPGLQTHGVITRVKDYGCLVKFYNDVQGLVPKHELSAEYIPDPENIFYSGQVVKVVVLNCEPSKERMLLSFK
ENSOPRP00000009706
S1
612
667
SNTLVDVKVLEKTKDGLEVAVLPHNIPAFLPTAHLSDHVANGPLLHHWLQAGDILH
ENSOPRP00000009706
S1
702
775
EIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTTPSDHFVEGQTVVAKVTNVDEEKQRMLLSLR
ENSOPRP00000009706
S1
1009
1077
TLSIGDKVTGTVKAVKATHVVVTLEDGIIGCIHASHILDDVPVGTSPTSTLKVGKTVTARVIGGRDVKT
ENSOPRP00000009706
S1
1204
1276
KLEEGAVAMGRVVKVTPNKGLIVSFPFGRKGRVSMFHVSDSYSETPLQDFTPRKVVRCYILSAEKPVLALSLR
Links
Other
S1
family RBPs
Other
Ochotona princeps
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PDCD11
Oryctolagus cuniculus
ENSOCUG00000006312
N
0.902
LOC784933
Bos taurus
ENSBTAG00000032779
N
0.828